背景：虽然卷积神经网络（CNN）实现了检测基于磁共振成像（MRI）扫描的阿尔茨海默病（AD）痴呆的高诊断准确性，但它们尚未应用于临床常规。这是一个重要原因是缺乏模型可理解性。最近开发的用于导出CNN相关性图的可视化方法可能有助于填补这种差距。我们调查了具有更高准确性的模型还依赖于先前知识预定义的判别脑区域。方法：我们培训了CNN，用于检测痴呆症和Amnestic认知障碍（MCI）患者的N = 663 T1加权MRI扫描的AD，并通过交叉验证和三个独立样本验证模型的准确性= 1655例。我们评估了相关评分和海马体积的关联，以验证这种方法的临床效用。为了提高模型可理解性，我们实现了3D CNN相关性图的交互式可视化。结果：跨三个独立数据集，组分离表现出广告痴呆症与控制的高精度（AUC $ \ GEQUQ $ 0.92）和MCI与控制的中等精度（AUC $ \约0.75美元）。相关性图表明海马萎缩被认为是广告检测的最具信息性因素，其其他皮质和皮质区域中的萎缩额外贡献。海马内的相关评分与海马体积高度相关（Pearson的r $ \大约$ -0.86，p <0.001）。结论：相关性地图突出了我们假设先验的地区的萎缩。这加强了CNN模型的可理解性，这些模型基于扫描和诊断标签以纯粹的数据驱动方式培训。

An Anomaly Detection (AD) System for Self-diagnosis has been developed for Multiphase Flow Meter (MPFM). The system relies on machine learning algorithms for time series forecasting, historical data have been used to train a model and to predict the behavior of a sensor and, thus, to detect anomalies.

Diffusion models have achieved justifiable popularity by attaining state-of-the-art performance in generating realistic objects from seemingly arbitrarily complex data distributions, including when conditioning generation on labels. Unfortunately, however, their iterative nature renders them very computationally inefficient during the sampling process. For the multi-class conditional generation problem, we propose a novel, structurally unique framework of diffusion models which are hierarchically branched according to the inherent relationships between classes. In this work, we demonstrate that branched diffusion models offer major improvements in efficiently generating samples from multiple classes. We also showcase several other advantages of branched diffusion models, including ease of extension to novel classes in a continual-learning setting, and a unique interpretability that offers insight into these generative models. Branched diffusion models represent an alternative paradigm to their traditional linear counterparts, and can have large impacts in how we use diffusion models for efficient generation, online learning, and scientific discovery.

In the era of digital healthcare, the huge volumes of textual information generated every day in hospitals constitute an essential but underused asset that could be exploited with task-specific, fine-tuned biomedical language representation models, improving patient care and management. For such specialized domains, previous research has shown that fine-tuning models stemming from broad-coverage checkpoints can largely benefit additional training rounds over large-scale in-domain resources. However, these resources are often unreachable for less-resourced languages like Italian, preventing local medical institutions to employ in-domain adaptation. In order to reduce this gap, our work investigates two accessible approaches to derive biomedical language models in languages other than English, taking Italian as a concrete use-case: one based on neural machine translation of English resources, favoring quantity over quality; the other based on a high-grade, narrow-scoped corpus natively written in Italian, thus preferring quality over quantity. Our study shows that data quantity is a harder constraint than data quality for biomedical adaptation, but the concatenation of high-quality data can improve model performance even when dealing with relatively size-limited corpora. The models published from our investigations have the potential to unlock important research opportunities for Italian hospitals and academia. Finally, the set of lessons learned from the study constitutes valuable insights towards a solution to build biomedical language models that are generalizable to other less-resourced languages and different domain settings.

Crop type maps are critical for tracking agricultural land use and estimating crop production. Remote sensing has proven an efficient and reliable tool for creating these maps in regions with abundant ground labels for model training, yet these labels remain difficult to obtain in many regions and years. NASA's Global Ecosystem Dynamics Investigation (GEDI) spaceborne lidar instrument, originally designed for forest monitoring, has shown promise for distinguishing tall and short crops. In the current study, we leverage GEDI to develop wall-to-wall maps of short vs tall crops on a global scale at 10 m resolution for 2019-2021. Specifically, we show that (1) GEDI returns can reliably be classified into tall and short crops after removing shots with extreme view angles or topographic slope, (2) the frequency of tall crops over time can be used to identify months when tall crops are at their peak height, and (3) GEDI shots in these months can then be used to train random forest models that use Sentinel-2 time series to accurately predict short vs. tall crops. Independent reference data from around the world are then used to evaluate these GEDI-S2 maps. We find that GEDI-S2 performed nearly as well as models trained on thousands of local reference training points, with accuracies of at least 87% and often above 90% throughout the Americas, Europe, and East Asia. Systematic underestimation of tall crop area was observed in regions where crops frequently exhibit low biomass, namely Africa and South Asia, and further work is needed in these systems. Although the GEDI-S2 approach only differentiates tall from short crops, in many landscapes this distinction goes a long way toward mapping the main individual crop types. The combination of GEDI and Sentinel-2 thus presents a very promising path towards global crop mapping with minimal reliance on ground data.

Algorithms and technologies are essential tools that pervade all aspects of our daily lives. In the last decades, health care research benefited from new computer-based recruiting methods, the use of federated architectures for data storage, the introduction of innovative analyses of datasets, and so on. Nevertheless, health care datasets can still be affected by data bias. Due to data bias, they provide a distorted view of reality, leading to wrong analysis results and, consequently, decisions. For example, in a clinical trial that studied the risk of cardiovascular diseases, predictions were wrong due to the lack of data on ethnic minorities. It is, therefore, of paramount importance for researchers to acknowledge data bias that may be present in the datasets they use, eventually adopt techniques to mitigate them and control if and how analyses results are impacted. This paper proposes a method to address bias in datasets that: (i) defines the types of data bias that may be present in the dataset, (ii) characterizes and quantifies data bias with adequate metrics, (iii) provides guidelines to identify, measure, and mitigate data bias for different data sources. The method we propose is applicable both for prospective and retrospective clinical trials. We evaluate our proposal both through theoretical considerations and through interviews with researchers in the health care environment.

Brain decoding is a field of computational neuroscience that uses measurable brain activity to infer mental states or internal representations of perceptual inputs. Therefore, we propose a novel approach to brain decoding that also relies on semantic and contextual similarity. We employ an fMRI dataset of natural image vision and create a deep learning decoding pipeline inspired by the existence of both bottom-up and top-down processes in human vision. We train a linear brain-to-feature model to map fMRI activity features to visual stimuli features, assuming that the brain projects visual information onto a space that is homeomorphic to the latent space represented by the last convolutional layer of a pretrained convolutional neural network, which typically collects a variety of semantic features that summarize and highlight similarities and differences between concepts. These features are then categorized in the latent space using a nearest-neighbor strategy, and the results are used to condition a generative latent diffusion model to create novel images. From fMRI data only, we produce reconstructions of visual stimuli that match the original content very well on a semantic level, surpassing the state of the art in previous literature. We evaluate our work and obtain good results using a quantitative semantic metric (the Wu-Palmer similarity metric over the WordNet lexicon, which had an average value of 0.57) and perform a human evaluation experiment that resulted in correct evaluation, according to the multiplicity of human criteria in evaluating image similarity, in over 80% of the test set.

Predictive coding is a message-passing framework initially developed to model information processing in the brain, and now also topic of research in machine learning due to some interesting properties. One of such properties is the natural ability of generative models to learn robust representations thanks to their peculiar credit assignment rule, that allows neural activities to converge to a solution before updating the synaptic weights. Graph neural networks are also message-passing models, which have recently shown outstanding results in diverse types of tasks in machine learning, providing interdisciplinary state-of-the-art performance on structured data. However, they are vulnerable to imperceptible adversarial attacks, and unfit for out-of-distribution generalization. In this work, we address this by building models that have the same structure of popular graph neural network architectures, but rely on the message-passing rule of predictive coding. Through an extensive set of experiments, we show that the proposed models are (i) comparable to standard ones in terms of performance in both inductive and transductive tasks, (ii) better calibrated, and (iii) robust against multiple kinds of adversarial attacks.

Learning how to navigate among humans in an occluded and spatially constrained indoor environment, is a key ability required to embodied agent to be integrated into our society. In this paper, we propose an end-to-end architecture that exploits Socially-Aware Tasks (referred as to Risk and Social Compass) to inject into a reinforcement learning navigation policy the ability to infer common-sense social behaviors. To this end, our tasks exploit the notion of immediate and future dangers of collision. Furthermore, we propose an evaluation protocol specifically designed for the Social Navigation Task in simulated environments. This is done to capture fine-grained features and characteristics of the policy by analyzing the minimal unit of human-robot spatial interaction, called Encounter. We validate our approach on Gibson4+ and Habitat-Matterport3D datasets.

A large amount of recent research has the far-reaching goal of finding training methods for deep neural networks that can serve as alternatives to backpropagation (BP). A prominent example is predictive coding (PC), which is a neuroscience-inspired method that performs inference on hierarchical Gaussian generative models. These methods, however, fail to keep up with modern neural networks, as they are unable to replicate the dynamics of complex layers and activation functions. In this work, we solve this problem by generalizing PC to arbitrary probability distributions, enabling the training of architectures, such as transformers, that are hard to approximate with only Gaussian assumptions. We perform three experimental analyses. First, we study the gap between our method and the standard formulation of PC on multiple toy examples. Second, we test the reconstruction quality on variational autoencoders, where our method reaches the same reconstruction quality as BP. Third, we show that our method allows us to train transformer networks and achieve a performance comparable with BP on conditional language models. More broadly, this method allows neuroscience-inspired learning to be applied to multiple domains, since the internal distributions can be flexibly adapted to the data, tasks, and architectures used.